Stochastic logistic models reproduce experimental time series of microbial communities

Snapshot #1

sophiedeb 11 months, 1 week ago Finished

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docker.io/stencila/executa-midi@sha256:0827e05ff052c8e465590b4a546042da06b1ef5bfa1941c6b85fa9e22bd34114

Files

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Type Path Last modified Size Actions
Data 11 months, 1 week ago 168.7MiB
Experimental.ipynb 11 months, 1 week ago 280.9KiB
Figures eLife.ipynb 11 months, 1 week ago 322.3KiB
Fisher Mehta neutral model annotated.ipynb 11 months, 1 week ago 108.5KiB
Influence interactions SOI and sgLV.ipynb 11 months, 1 week ago 2.1MiB
Noise color fit comparison (linear vs spline).ipynb 11 months, 1 week ago 50.0KiB
README 11 months, 1 week ago 1.1KiB
Study noise no interaction.ipynb 11 months, 1 week ago 1.5MiB
Study noise with interaction.ipynb 11 months, 1 week ago 1.3MiB
Understand noise color.ipynb 11 months, 1 week ago 60.6KiB
Understanding Fisher Mehta Figure 2B.ipynb 11 months, 1 week ago 2.0MiB
Width distribution dx.ipynb 11 months, 1 week ago 184.7KiB
brownian.py 11 months, 1 week ago 2.6KiB
elife_settings.py 11 months, 1 week ago 1.1KiB
generate_timeseries.py 11 months, 1 week ago 15.2KiB
make_colormap.py 11 months, 1 week ago 1.8KiB
neutral_covariance_test.py 11 months, 1 week ago 5.1KiB
neutrality_analysis.py 11 months, 1 week ago 4.0KiB
noise_analysis.py 11 months, 1 week ago 26.9KiB
noise_color_analysis.py 11 months, 1 week ago 2.7KiB
noise_parameters.py 11 months, 1 week ago 409.0B
noise_properties_plotting.py 11 months, 1 week ago 22.8KiB
results 11 months, 1 week ago 245.8KiB