Stochastic logistic models reproduce experimental time series of microbial communities

Snapshot #16

nokome 7 months, 2 weeks ago Finished

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docker.io/stencila/executa-midi@sha256:1b9d072248020fcd9b3cafdae7b7c770c6af2a9128e8b3764be14ef6cd390388

Files

The files archived in this snapshot.

Type Path Last modified Size Actions
Data 7 months, 2 weeks ago 168.7MiB
Experimental.ipynb 7 months, 2 weeks ago 280.9KiB
Figures eLife.ipynb 7 months, 2 weeks ago 322.3KiB
Fisher Mehta neutral model annotated.ipynb 7 months, 2 weeks ago 108.5KiB
Influence interactions SOI and sgLV.ipynb 7 months, 2 weeks ago 2.1MiB
Noise color fit comparison (linear vs spline).ipynb 7 months, 2 weeks ago 50.0KiB
README 7 months, 2 weeks ago 1.1KiB
Study noise no interaction.ipynb 7 months, 2 weeks ago 1.5MiB
Study noise with interaction.ipynb 7 months, 2 weeks ago 1.3MiB
Understand noise color.ipynb 7 months, 2 weeks ago 60.6KiB
Understanding Fisher Mehta Figure 2B.ipynb 7 months, 2 weeks ago 2.0MiB
Width distribution dx.ipynb 7 months, 2 weeks ago 184.7KiB
article.ipynb 7 months, 2 weeks ago 311.0KiB
article.xml 7 months, 2 weeks ago 135.8KiB
article.xml.media 7 months, 2 weeks ago 1.3MiB
brownian.py 7 months, 2 weeks ago 2.6KiB
elife_settings.py 7 months, 2 weeks ago 1.1KiB
generate_timeseries.py 7 months, 2 weeks ago 15.2KiB
index.html 7 months, 2 weeks ago 437.5KiB
index.html.media 7 months, 2 weeks ago 143.1KiB
make_colormap.py 7 months, 2 weeks ago 1.8KiB
neutral_covariance_test.py 7 months, 2 weeks ago 5.1KiB
neutrality_analysis.py 7 months, 2 weeks ago 4.0KiB
noise_analysis.py 7 months, 2 weeks ago 26.9KiB
noise_color_analysis.py 7 months, 2 weeks ago 2.7KiB
noise_parameters.py 7 months, 2 weeks ago 409.0B
noise_properties_plotting.py 7 months, 2 weeks ago 22.8KiB
results 7 months, 2 weeks ago 669.2MiB
smooth_spline.py 7 months, 2 weeks ago 4.6KiB
timeseries_plotting.py 7 months, 2 weeks ago 1.0KiB