Stochastic logistic models reproduce experimental time series of microbial communities

Snapshot #4

nokome 11 months ago Finished

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docker.io/stencila/executa-midi@sha256:03f88123e34359e23a3a9763aa66702bb7ac3118a2b5356d852c6928f863d81b

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Type Path Last modified Size Actions
55650v1 11 months ago 138.8KiB
55650v1.ipynb 11 months ago 134.5KiB
Data 11 months ago 168.7MiB
Experimental.ipynb 11 months ago 280.9KiB
Figures eLife.ipynb 11 months ago 322.3KiB
Fisher Mehta neutral model annotated.ipynb 11 months ago 108.5KiB
Influence interactions SOI and sgLV.ipynb 11 months ago 2.1MiB
Noise color fit comparison (linear vs spline).ipynb 11 months ago 50.0KiB
README 11 months ago 1.1KiB
Study noise no interaction.ipynb 11 months ago 1.5MiB
Study noise with interaction.ipynb 11 months ago 1.3MiB
Understand noise color.ipynb 11 months ago 60.6KiB
Understanding Fisher Mehta Figure 2B.ipynb 11 months ago 2.0MiB
Width distribution dx.ipynb 11 months ago 184.7KiB
article.ipynb.media 11 months ago 300.6KiB
article.xml 11 months ago 135.8KiB
article.xml.media 11 months ago 300.6KiB
brownian.py 11 months ago 2.6KiB
elife_settings.py 11 months ago 1.1KiB
generate_timeseries.py 11 months ago 15.2KiB
index.html 11 months ago 400.5KiB
index.html.media 11 months ago 300.6KiB
make_colormap.py 11 months ago 1.8KiB
neutral_covariance_test.py 11 months ago 5.1KiB
neutrality_analysis.py 11 months ago 4.0KiB
noise_analysis.py 11 months ago 26.9KiB
noise_color_analysis.py 11 months ago 2.7KiB
noise_parameters.py 11 months ago 409.0B
noise_properties_plotting.py 11 months ago 22.8KiB
results 11 months ago 669.2MiB
smooth_spline.py 11 months ago 4.6KiB
timeseries_plotting.py 11 months ago 1.0KiB